More classifiers
Contents
# Install the necessary dependencies
import os
import sys
!{sys.executable} -m pip install --quiet pandas scikit-learn numpy matplotlib jupyterlab_myst ipython
12.2. More classifiers#
In this section, you will use the dataset you saved from the last section full of balanced, clean data all about cuisines.
You will use this dataset with a variety of classifiers to predict a given national cuisine based on a group of ingredients. While doing so, youāll learn more about some of the ways that algorithms can be leveraged for classification tasks.
12.2.1. Exercise - predict a national cuisine#
1. Working in this sectionās build-classification-models file, import that file along with the Pandas library:
import pandas as pd
cuisines_df = pd.read_csv("https://static-1300131294.cos.ap-shanghai.myqcloud.com/data/classification/cleaned_cuisines.csv")
cuisines_df.head()
Unnamed: 0 | cuisine | almond | angelica | anise | anise_seed | apple | apple_brandy | apricot | armagnac | ... | whiskey | white_bread | white_wine | whole_grain_wheat_flour | wine | wood | yam | yeast | yogurt | zucchini | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | 0 | indian | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
1 | 1 | indian | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
2 | 2 | indian | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
3 | 3 | indian | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
4 | 4 | indian | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
5 rows Ć 382 columns
2. Now, import several more libraries:
from sklearn.linear_model import LogisticRegression
from sklearn.model_selection import train_test_split, cross_val_score
from sklearn.metrics import accuracy_score,precision_score,confusion_matrix,classification_report, precision_recall_curve
from sklearn.svm import SVC
import numpy as np
3. Divide the x and y coordinates into two dataframes for training. cuisine
can be the labels dataframe:
cuisines_label_df = cuisines_df['cuisine']
cuisines_label_df.head()
0 indian
1 indian
2 indian
3 indian
4 indian
Name: cuisine, dtype: object
4. Drop that Unnamed: 0
column and the cuisine
column, calling drop()
. Save the rest of the data as trainable features:
cuisines_feature_df = cuisines_df.drop(['Unnamed: 0', 'cuisine'], axis=1)
cuisines_feature_df.head()
almond | angelica | anise | anise_seed | apple | apple_brandy | apricot | armagnac | artemisia | artichoke | ... | whiskey | white_bread | white_wine | whole_grain_wheat_flour | wine | wood | yam | yeast | yogurt | zucchini | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
5 rows Ć 380 columns
Now you are ready to train your model!
12.2.2. Choosing your classifier#
Now that your data is clean and ready for training, you have to decide which algorithm to use for the job.
Scikit-learn groups classification under Supervised Learning, and in that category you will find many ways to classify. The variety is quite bewildering at first sight. The following methods all include classification techniques:
Linear Models
Support Vector Machines
Stochastic Gradient Descent
Nearest Neighbors
Gaussian Processes
Decision Trees
Ensemble methods (voting Classifier)
Multiclass and multioutput algorithms (multiclass and multilabel classification, multiclass-multioutput classification)
See also
You can also use neural networks to classify data, but that is outside the scope of this section.
12.2.2.1. What classifier to go with?#
So, which classifier should you choose? Often, running through several and looking for a good result is a way to test. Scikit-learn offers a side-by-side comparison on a created dataset, comparing KNeighbors, SVC two ways, GaussianProcessClassifier, DecisionTreeClassifier, RandomForestClassifier, MLPClassifier, AdaBoostClassifier, GaussianNB and QuadraticDiscrinationAnalysis, showing the results visualized:
See also
Plots generated on Scikit-learnās documentation.
AutoML solves this problem neatly by running these comparisons in the cloud, allowing you to choose the best algorithm for your data. Try it here.
12.2.2.2. A better approach#
A better way than wildly guessing, however, is to follow the ideas on this downloadable ML Cheat sheet. Here, we discover that, for our multiclass problem, we have some choices:
Note
A section of Microsoftās Algorithm Cheat Sheet, detailing multiclass classification options.
See also
Download this cheat sheet, print it out, and hang it on your wall!
12.2.2.3. Reasoning#
Letās see if we can reason our way through different approaches given the constraints we have:
Neural networks are too heavy. Given our clean, but minimal dataset, and the fact that we are running training locally via notebooks, neural networks are too heavyweight for this task.
No two-class classifier. We do not use a two-class classifier, so that rules out one-vs-all.
Decision tree or logistic regression could work. A decision tree might work, or logistic regression for multiclass data.
Multiclass Boosted Decision Trees solve a different problem. The multiclass boosted decision tree is most suitable for nonparametric tasks, e.g. tasks designed to build rankings, so it is not useful for us.
12.2.2.4. Using Scikit-learn#
We will be using Scikit-learn to analyze our data. However, there are many ways to use logistic regression in Scikit-learn. Take a look at the parameters to pass.
Essentially there are two important parameters - multi_class
and solver
- that we need to specify, when we ask Scikit-learn to perform a logistic regression. The multi_class
value applies a certain behavior. The value of the solver is what algorithm to use. Not all solvers can be paired with all multi_class
values.
According to the docs, in the multiclass case, the training algorithm:
Uses the one-vs-rest (OvR) scheme, if the
multi_class
option is set toovr
.Uses the cross-entropy loss, if the
multi_class
option is set tomultinomial
. (Currently themultinomial
option is supported only by the ālbfgsā, āsagā, āsagaā and ānewton-cgā solvers.)
See also
The āschemeā here can either be āovrā (one-vs-rest) or āmultinomialā. Since logistic regression is really designed to support binary classification, these schemes allow it to better handle multiclass classification tasks. šsource
The āsolverā is defined as āthe algorithm to use in the optimization problemā. source.
Scikit-learn offers this table to explain how solvers handle different challenges presented by different kinds of data structures:
12.2.3. Exercise - split the data#
We can focus on logistic regression for our first training trial since you recently learned about the latter in a previous section.
Split your data into training and testing groups by calling train_test_split()
:
X_train, X_test, y_train, y_test = train_test_split(cuisines_feature_df, cuisines_label_df, test_size=0.3)
12.2.4. Exercise - apply logistic regression#
Since you are using the multiclass case, you need to choose what scheme to use and what solver to set. Use LogisticRegression with a multiclass setting and the liblinear solver to train.
1. Create a logistic regression with multi_class set to ovr
and the solver set to liblinear
:
lr = LogisticRegression(multi_class='ovr',solver='liblinear')
model = lr.fit(X_train, np.ravel(y_train))
accuracy = model.score(X_test, y_test)
print ("Accuracy is {}".format(accuracy))
Accuracy is 0.79232693911593
See also
Try a different solver like lbfgs
, which is often set as default.
Note
Use Pandas ravel
function to flatten your data when needed.
The accuracy is good at over 80%!
2. You can see this model in action by testing one row of data (#50):
print(f'ingredients: {X_test.iloc[50][X_test.iloc[50]!=0].keys()}')
print(f'cuisine: {y_test.iloc[50]}')
ingredients: Index(['cayenne', 'cilantro', 'cumin', 'lime', 'pineapple', 'tomato',
'vegetable_oil'],
dtype='object')
cuisine: indian
See also
Try a different row number and check the results.
3. Digging deeper, you can check for the accuracy of this prediction:
test= X_test.iloc[50].values.reshape(-1, 1).T
proba = model.predict_proba(test)
classes = model.classes_
resultdf = pd.DataFrame(data=proba, columns=classes)
topPrediction = resultdf.T.sort_values(by=[0], ascending = [False])
topPrediction.head()
/usr/share/miniconda/envs/open-machine-learning-jupyter-book/lib/python3.9/site-packages/sklearn/base.py:409: UserWarning: X does not have valid feature names, but LogisticRegression was fitted with feature names
warnings.warn(
0 | |
---|---|
indian | 0.866546 |
thai | 0.123433 |
chinese | 0.008208 |
korean | 0.000927 |
japanese | 0.000886 |
See also
Can you explain why the model is pretty sure this is an Indian cuisine?
4. Get more detail by printing a classification report, as you did in the regression sections:
y_pred = model.predict(X_test)
print(classification_report(y_test,y_pred))
precision recall f1-score support
chinese 0.72 0.72 0.72 230
indian 0.92 0.87 0.90 249
japanese 0.76 0.76 0.76 249
korean 0.84 0.71 0.77 238
thai 0.74 0.91 0.81 233
accuracy 0.79 1199
macro avg 0.80 0.79 0.79 1199
weighted avg 0.80 0.79 0.79 1199
12.2.5. Your turn! š#
In this section, you used your cleaned data to build a machine learning model that can predict a national cuisine based on a series of ingredients. Take some time to read through the many options Scikit-learn provides to classify data. Dig deeper into the concept of āsolverā to understand what goes on behind the scenes.
Assignment - Study the solvers.
12.2.6. Acknowledgments#
Thanks to Microsoft for creating the open-source course ML-For-Beginners. It inspires the majority of the content in this chapter.